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Agent skills

Reusable instructions for compatible AI agents.

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Agent skill

Motion Pipeline Skill

CPU-only motion data processing pipeline for game animation: BVH import, contact detection, root decomposition, motion blending, FABRIK IK. No GPU required.

OpenClawDesign
notque445
Agent skill

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Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for condition/batch/covariate designs.

OpenClawData & Analytics
aipoch2,022
Agent skill

arboreto

Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships.

OpenClawData & Analytics
aipoch2,022
Agent skill

Clinical Trial Analysis Pipeline

End-to-end clinical trial analysis workflow from CDISC SDTM/ADaM loading through ICH E9(R1) estimand-driven primary analysis to CONSORT 2025 regulatory-compliant reporting. Covers data preparation, FDA 2023 marginal vs conditional logistic regression, categorical tests with Boschloo, modern HTE/s...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232
Agent skill

Categorical Association Tests for Clinical Data

Tests associations between categorical variables in clinical data using chi-square, Fisher's exact, Boschloo, Cochran-Mantel-Haenszel, and modern McNemar variants with calibrated confidence intervals (Wilson, Newcombe, Miettinen-Nurminen). Use when analyzing categorical outcomes, paired binary en...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232
Agent skill

counts_df: rows = sgRNAs, columns = samples

Batch effect correction for CRISPR screens covering ComBat empirical-Bayes, RUV, SVA, control-sgRNA normalization, and the model-based alternative of including batch as a covariate in MAGeCK MLE or Chronos. Covers screen-specific batch sources (passage cohort, library lot, infection day, sequenci...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232
Agent skill

Analytical Validation and Detection Limits

Treats a ctDNA assay as a molecule-counting experiment at the Poisson edge and builds its analytical-validation case the measurement-science way. Covers the genome-equivalent currency (~330 haploid copies/ng), the lambda = input_GE x VAF sampling ceiling (lambda>=3 for ~95% detection), the error-...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232
Agent skill

Per-CpG Differential Methylation Testing

Tests individual CpG sites for differential methylation (DMC/DMP) from bisulfite sequencing counts or array/continuous beta-value matrices. Covers the count-vs-continuous fork that dictates the model, beta-value vs M-value logit (Du 2010), beta-binomial overdispersion count models (DSS, methylKit...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232
Agent skill

Manhattan, QQ, and Locuszoom Plots

Build Manhattan, Miami, QQ, and locuszoom-style regional plots from GWAS, TWAS, PWAS, and QTL summary statistics with correct genomic-inflation diagnostics, multi-trait overlays, lead-SNP labeling, and LD-aware regional rendering. Use when visualizing association results across the genome, compar...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232

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