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Agent skills

Reusable instructions for compatible AI agents.

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Agent skill

Cytometry QC

Comprehensive quality control for flow cytometry and CyTOF data. Covers flow rate stability, signal drift, margin events, dead cell exclusion, and batch QC. Use when assessing acquisition quality or identifying problematic samples before analysis.

ClaudeCodexOpenClawData & Analytics
David-Li04063
Apache-2.0View resource
Agent skill

Motif Deviation (chromVAR)

Analyze TF motif accessibility variability across samples or single cells using chromVAR. Use when identifying TF motifs whose accessibility correlates with conditions, computing per-sample motif z-scores after matched background correction, comparing to ArchR / Signac equivalents, or distinguish...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232
Agent skill

Metabolomics Statistical Analysis

Decision-grade statistical analysis for metabolomics intensity tables. Covers transformation and scaling (Pareto vs unit-variance as a hidden hypothesis), unsupervised structure (PCA/HCA for QC), permutation-validated PLS-DA/OPLS-DA (R2 vs Q2, double CV, VIP as heuristic), univariate testing (Wel...

ClaudeCodexOpenClawData & Analytics
GPTomics1,232
Agent skill

ML Training Recipes

Comprehensive open-source library of AI research and engineering skills for any AI model. Package the skills and your claude code/codex/gemini agent will be an AI research agent with full horsepower. Maintained by Orchestra Research.

ClaudeCodexGeminiData & Analytics
Orchestra-Research14,246
Agent skill

🧪 gi-expression

Predicts tissue or cell-type expression from DNA sequences using the Genomic Intelligence model via a hosted API.

OpenClawEducation & Research
ClawBio1,173
Agent skill

Diversity Analysis

Alpha and beta diversity of an amplicon (16S/ITS) ASV/OTU community table - observed features, Shannon, Pielou evenness, Faith PD, Bray-Curtis, Jaccard, weighted/unweighted/generalized UniFrac, Aitchison/RPCA - via QIIME2 core-metrics-phylogenetic, phyloseq/vegan, and scikit-bio. Covers the three...

ClaudeCodexOpenClawEducation & Research
GPTomics1,232
Agent skill

Missing Data Sensitivity for Confirmatory Trials

Implements missing-data sensitivity analyses for confirmatory clinical trials including MMRM under MAR (with Kenward-Roger correction), reference-based multiple imputation (J2R, CR, CIR, LMCF per Carpenter-Roger 2013), Permutt delta-adjustment / tipping-point analysis, pattern-mixture identifying...

ClaudeCodexOpenClawHealthcare & Life Sciences
GPTomics1,232

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