Agent skill
Developer Collaboration Guidelines
When working with the Coot developer, focus on debugging and fixing issues, not workarounds
OpenClawDevelopment & Engineering
pemsley171
GPL-3.0-onlyView resource
Agent skills
Reusable instructions for compatible AI agents.
Explore by field
Loading catalog totals…Field counts come from the latest full-catalog snapshot. A resource can belong to several fields and platforms.
Resources
Search resultsAgent skill
Coot Inline Graphs
Create interactive inline Chart.js graphs directly in the chat from live Coot data. Use this skill whenever the user asks to plot, graph, chart, or visualise any per-residue data from Coot — B-factors, density correlations, Ramachandran probabilities, rotamer scores, or any other per-residue metr...
OpenClawData & Analytics
pemsley171
GPL-3.0-onlyView resource
Agent skill
Key Lessons from Chain A Refinement Session
Best Practices for Model-Building Tools and Refinement
ClaudeCodexOpenClawData & Analytics
pemsley171
GPL-3.0-onlyView resource
Agent skill
Improved MCP Function Documentation for Coot
Using Density-Fit Correlations in Coot
ClaudeEducation & Research
pemsley171
GPL-3.0-onlyView resource
Agent skill
PDBe API Access from Coot
Query the PDBe (Protein Data Bank in Europe) REST API and Solr search API from within Coot to access structure metadata, validation data, revision history, search capabilities, and download coordinate files
OpenClawData & Analytics
pemsley171
GPL-3.0-onlyView resource
Agent skill
Coot Figure-Making Best Practices
Best practices for creating publication-quality molecular graphics figures in Coot using user-defined colors, ribbons, and molecular representations
OpenClawContent & Media
pemsley171
GPL-3.0-onlyView resource
Agent skill
Compare chains A and B
NCS Reference Guidance
OpenClawContent & Media
pemsley171
GPL-3.0-onlyView resource
Agent skill
Coot Structure Validation Best Practices
Comprehensive structure validation combining model-to-map analysis and unmodeled density detection
OpenClawData & Analytics
pemsley171
GPL-3.0-onlyView resource
Agent skill
Coot-RDKit Integration
RDKit molecular manipulation and visualization within Coot's Python environment. Use when working with Coot and need to (1) Create RDKit molecules from Coot monomers, (2) Modify molecular structures (e.g., atom substitution), (3) Generate 2D chemical structure diagrams, (4) Perform cheminformatic...
OpenClawData & Analytics
pemsley171
GPL-3.0-onlyView resource
Agent skill
Coot Essential API Functions
API documentation to be loaded at startup - when starting a Coot session, immediately call get_function_descriptions() with the functions listed in this skill.
OpenClawData & Analytics
pemsley171
GPL-3.0-onlyView resource
Agent skill
Coot Python API Best Practices
Best Practices for using Coot MCP
OpenClawData & Analytics
pemsley171
GPL-3.0-onlyView resource
Agent skill
Coot Refinement Best Practices
Best practices for protein structure refinement and validation in Coot. Use when performing (1) Residue refinement operations, (2) Model building and fitting, (3) Rotamer fixing, (4) Scripted/automated refinement workflows, (5) Validation and correlation checking.
ClaudeCodexOpenClawEducation & Research
pemsley171
GPL-3.0-onlyView resource
No matching resources
Try a broader search or clear some filters.
Platform labels describe intended use. Read each resource's author credits, requirements and available access methods.