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Agent skills

Reusable instructions for compatible AI agents.

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Agent skill

Scientific Writing

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figure...

OpenClawEducation & Research
K-Dense-AI56,006
Agent skill

QuTiP 5

Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED. Best for physics research, open system dynamics, and educational simulations. NOT for circuit-based quantum computing—use qiskit, cirq, o...

ClaudeCodexOpenClawEducation & Research
K-Dense-AI
Agent skill

Citation Management

Citation Management workflow skill. Use this skill when the user needs Manage citations systematically throughout the research and writing process and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

ClaudeCursorGeminiEducation & Research
K-Dense-AI
MIT + CC-BY-4.0View resource
Agent skill

Scientific Writing

Scientific Writing workflow skill. Use this skill when the user needs This is the core skill for the deep research and writing tool\u2014combining AI-driven deep research with well-formatted written outputs. Every document produced is backed by comprehensive literature search and verified citatio...

ClaudeCursorGeminiEducation & Research
K-Dense-AI
MIT + CC-BY-4.0View resource
Agent skill

PufferLib - High-Performance Reinforcement Learning

High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel training, vectorized environments, multi-agent systems, or integration with game environments (Atari, Procgen, NetHack). Achieves 2-10x speedups over standard implementations. For quic...

OpenClawData & Analytics
K-Dense-AI
Agent skill

MarkItDown - File to Markdown Conversion

Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.

OpenClawContent & Media
K-Dense-AI
Agent skill

TileDB-VCF

Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.

OpenClawData & Analytics
K-Dense-AI
Agent skill

Pathway Enrichment

Run pathway and gene-set enrichment analysis on gene lists or ranked gene data, then interpret the results. Use whenever the user has a set of genes (differentially expressed genes from PyDESeq2/Scanpy, CRISPR-screen hits, cluster marker genes, proteomics hits) and wants to know which biological ...

ClaudeCodexOpenClawData & Analytics
K-Dense-AI
Agent skill

Bulk RNA-seq

End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off to differential expression (pydeseq2), pathway/GSEA enrichment (pathwa...

ClaudeCodexOpenClawData & Analytics
K-Dense-AI56,006
Agent skill

PyDESeq2

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

ClaudeCodexOpenClawData & Analytics
K-Dense-AI

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