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End-to-end proteomics workflow from MaxQuant output to differential protein abundance. Orchestrates data import, normalization, imputation, and statistical testing with limma (default) or MSstats for complex feature-level designs. Use when processing mass spectrometry proteomics.
MS spectral matching and metabolite ID with matchms. Import spectra (mzML, MGF, MSP, JSON), filter/normalize peaks, score similarity (cosine, modified cosine, fingerprint), build reproducible pipelines, identify unknowns vs spectral libraries. Use pyopenms for full LC-MS/MS proteomics.
MS data processing with PyOpenMS for LC-MS/MS proteomics and metabolomics — mzML/mzXML I/O, signal processing (smoothing, peak picking, centroiding), feature detection/linking, peptide/protein ID with FDR, untargeted metabolomics. Use matchms for simple spectral matching.
Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking), detect isotope features, or perform peptide identification in proteomics/metabolomics workflows.
Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.
Agent skill for Researcher, Data Scientist, ML / AI Engineer, published by mkurman. Project details and file access are provided by the publisher.
Agent skill for Researcher, Data Scientist, ML / AI Engineer, published by K-Dense Inc.. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by ComeOnOliver. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Researcher, Business Intelligence Analyst, published by oimiragieo. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Researcher, Market Research Analyst, published by mkurman. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Researcher, Market Research Analyst, published by KunanonJ. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Researcher, Market Research Analyst, published by luokai0. Project details and file access are provided by the publisher.
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