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Produce and interpret PCA, t-SNE, UMAP, and PHATE plots for high-dimensional omics data with rigor about which method preserves what (variance, local structure, manifold, transitions), hyperparameter sensitivity, and the well-documented limits of 2D embeddings. Covers PCA biplot/scree/loadings, t...
Harmony batch correction for scRNA-seq and other omics. Removes batch effects from PCA embeddings while preserving biology. Run after PCA, before UMAP. Scales to millions of cells. Python (harmonypy, scanpy) and R (Seurat).
Generate single-cell RNA-seq analysis code templates for Seurat and Scanpy,
Seurat single-cell analysis skill for clustering, annotation, and trajectory analysis
Analyze Perturb-seq and CROP-seq CRISPR screening data integrated with scRNA-seq. Use when identifying gene function through pooled genetic perturbations in single cells.
Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by pwwang. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by FridrichMethod. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, ML / AI Engineer, Researcher, published by majiayu000. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Market Research Analyst, published by BioTender-max. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by pwwang. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Researcher, Business Intelligence Analyst, published by pwwang. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Market Research Analyst, published by majiayu000. Project details and file access are provided by the publisher.
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