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Import transcript-level quantifications from Salmon/kallisto into R for gene-level analysis with DESeq2/edgeR using tximport or tximeta. Use when importing transcript counts into R for DESeq2/edgeR.
Imports gene expression count matrices from featureCounts, HTSeq, STAR ReadsPerGene, Salmon/kallisto via tximport or tximeta, RSEM, 10X Genomics MTX/H5, AnnData H5AD, and RDS. Handles silent-miscounting traps (featureCounts -p v2.0.2 API break, STAR strandedness column choice, salmon NumReads-sum...
End-to-end RNA-seq workflow from FASTQ files to differential expression results. Covers QC, quantification (Salmon or STAR+featureCounts), and DESeq2 analysis with visualization. Use when running RNA-seq from FASTQ to DE results.
Agent skill for Data Scientist, Business Intelligence Analyst, Market Research Analyst, published by Rudson-Oliveira. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by Rudson-Oliveira. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Market Research Analyst, published by FridrichMethod. Project details and file access are provided by the publisher.
Agent skill for Researcher, Data Scientist, published by majiayu000. Project details and file access are provided by the publisher.
Agent skill for Researcher, Data Scientist, published by majiayu000. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by BioTender-max. Project details and file access are provided by the publisher.
Agent skill for Data Scientist, Business Intelligence Analyst, Researcher, published by BioTender-max. Project details and file access are provided by the publisher.
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